DreEX6090813 @ danRer10
Exon Skipping
Gene
ENSDARG00000063100 | psmd14
Description
proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 [Source:ZFIN;Acc:ZDB-GENE-070410-56]
Coordinates
chr11:10858990-10861926:-
Coord C1 exon
chr11:10861855-10861926
Coord A exon
chr11:10860314-10860433
Coord C2 exon
chr11:10858990-10859060
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCATCTGTATGTTTGTGTAGATG
3' ss Score
7.33
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GGTCCTCCCACAGATGCTCCCGCTGTGGACACGGCTGAACAGGTGTACATCTCCTCCCTCGCTCTGCTCAAG
Seq A exon
ATGCTGAAACATGGCCGTGCTGGTGTGCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTTGTGGACGATTACACAGTACGCGTGATTGATGTGTTTGCCATGCCGCAGTCAGGAACG
Seq C2 exon
GGTGTGAGCGTTGAGGCCGTGGACCCCGTTTTTCAAGCTAAGATGTTGGACATGTTAAAGCAGACGGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063100-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139816=JAB=PU(12.3=58.3)
A:
PF0139816=JAB=FE(34.2=100)
C2:
PF0139816=JAB=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCCCACAGATGCTCCC
R:
CCCGTCTGCTTTAACATGTCCA
Band lengths:
139-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]