GgaEX1046677 @ galGal3
Exon Skipping
Gene
ENSGALG00000011128 | Q5ZJ35_CHICK
Description
NA
Coordinates
chr7:22986046-22987755:-
Coord C1 exon
chr7:22987684-22987755
Coord A exon
chr7:22987230-22987349
Coord C2 exon
chr7:22986046-22986116
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTATTTTGTCTTCATTCCAGATG
3' ss Score
10.17
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GGGCCACCAACAGATGCTCCTGCGGTCGACACAGCGGAACAGGTTTATATCTCATCCCTGGCACTGCTGAAA
Seq A exon
ATGTTGAAACATGGTCGTGCTGGTGTCCCTATGGAAGTTATGGGGCTGATGCTTGGGGAATTTGTTGATGATTACACTGTAAGAGTGATTGATGTTTTTGCTATGCCACAGTCTGGAACG
Seq C2 exon
GGTGTCAGTGTGGAGGCAGTTGATCCTGTATTTCAAGCAAAAATGTTGGATATGCTGAAACAGACAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011128-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139816=JAB=PU(12.3=58.3)
A:
PF0139816=JAB=FE(34.2=100)
C2:
PF0139816=JAB=FE(20.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCAACAGATGCTCCTGC
R:
TCCTGTCTGTTTCAGCATATCCA
Band lengths:
138-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]