BtaEX6009635 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37067760-37073407:+
Coord C1 exon
chr2:37067760-37067821
Coord A exon
chr2:37071550-37071615
Coord C2 exon
chr2:37073342-37073407
Length
66 bp
Sequences
Splice sites
3' ss Seq
GTTATAATTTTTTTCTACAGGAA
3' ss Score
9.96
5' ss Seq
GAGGTAGAA
5' ss Score
4.54
Exon sequences
Seq C1 exon
CAATAATTGCTGCTGAGGAGAAGCGAAAGCAAAAAGAACAGATAAAGATTATGAAACAACAG
Seq A exon
GAAAAAATTAAGAGAATACAACAAATCAGAATGGAAAAAGAGCTTCGAGCCCAGCAAATTCTAGAG
Seq C2 exon
GCAAAAAAGAAAAAGAAGGAAGAAGCAGCAAATGCCAAATTATTGGAGGCCGAGAAACGAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654-'27-30,'27-28,29-30=AN
Average complexity
A_S
Mappability confidence:
90%=80=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.682 C2=0.856
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAATAATTGCTGCTGAGGAGAAG
R:
TTTATTCGTTTCTCGGCCTCCA
Band lengths:
127-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]