GgaEX6043395 @ galGal3
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38221011-38222425:-
Coord C1 exon
chr7:38222364-38222425
Coord A exon
chr7:38221466-38221531
Coord C2 exon
chr7:38221011-38221076
Length
66 bp
Sequences
Splice sites
3' ss Seq
CAATTTTCTTTCCTTTGTAGGAA
3' ss Score
11.08
5' ss Seq
GAGGTAGAC
5' ss Score
5.41
Exon sequences
Seq C1 exon
CTATTATGGCAGCTGAAGAAAAGCGGAAGCAAAAAGAGCAGATAAAGATAATGAAGCAGCAG
Seq A exon
GAAAAGATTAAGCGGATCCAGCAAATCAGAATGGAGAAAGAACTTCGAGCTCAACAGATTTTAGAG
Seq C2 exon
GCAAAAAAGAAGAAGAAAGAAGAAGCAGCAAATGCTAAATTACTGGAGGCTGAAAAACGAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-'19-24,'19-23,20-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.727 C2=0.955
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATTATGGCAGCTGAAGAAAAGCG
R:
CTTTATTCGTTTTTCAGCCTCCAGT
Band lengths:
127-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]