RnoEX6016960 @ rn6
Exon Skipping
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:46006076-46013114:-
Coord C1 exon
chr3:46013053-46013114
Coord A exon
chr3:46007569-46007634
Coord C2 exon
chr3:46006076-46006141
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTCATCATTTTTCTTACAGGAA
3' ss Score
11.23
5' ss Seq
GAGGTAGAA
5' ss Score
4.54
Exon sequences
Seq C1 exon
CAATAATGGCTGCTGAAGAGAAGCGGAAGCAGAAAGAACAAATGAAGATGCTGAAGCAGCAG
Seq A exon
GAAAAAATTAAGAGAATACAGCAAATCAGAATGGAAAAAGAACTCCGAGCTCAGCAGATTCTTGAG
Seq C2 exon
GCTAAAAAGAAAAAGAAGGAAGAAGCAGCAAATGCCAAATTATTGGAGGCCGAGAAACGAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984-'34-34,'34-33,35-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.727 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAATAATGGCTGCTGAAGAGAAG
R:
CTTGGTTCGTTTCTCGGCCTC
Band lengths:
128-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]