GgaEX6043395 @ galGal4
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36084674-36086088:-
Coord C1 exon
chr7:36086027-36086088
Coord A exon
chr7:36085129-36085194
Coord C2 exon
chr7:36084674-36084739
Length
66 bp
Sequences
Splice sites
3' ss Seq
CAATTTTCTTTCCTTTGTAGGAA
3' ss Score
11.08
5' ss Seq
GAGGTAGAC
5' ss Score
5.41
Exon sequences
Seq C1 exon
CTATTATGGCAGCTGAAGAAAAGCGGAAGCAAAAAGAGCAGATAAAGATAATGAAGCAGCAG
Seq A exon
GAAAAGATTAAGCGGATCCAGCAAATCAGAATGGAGAAAGAACTTCGAGCTCAACAGATTTTAGAG
Seq C2 exon
GCAAAAAAGAAGAAGAAAGAAGAAGCAGCAAATGCTAAATTACTGGAGGCTGAAAAACGAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-'30-31,'30-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.727 C2=0.955
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATTATGGCAGCTGAAGAAAAGCG
R:
CTTTATTCGTTTTTCAGCCTCCAGT
Band lengths:
127-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]