DreEX0016657 @ danRer10
Exon Skipping
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11728136-11729313:+
Coord C1 exon
chr6:11728136-11728197
Coord A exon
chr6:11728365-11728430
Coord C2 exon
chr6:11729248-11729313
Length
66 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTCCTCTCCTACCAGGAA
3' ss Score
11.66
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
CCATCATGGCCGCAGAGGAGAGGAGAAAGCAAAAGGAGCAGCTGAAGATACTTAAACAGCAG
Seq A exon
GAAAAGATAAAGCGTATTCAGCAAATCCGCATGGAGAAGGAACTCCGCGCACAGCAGATTCTCGAG
Seq C2 exon
GCAAAGCGGAAAAAGAGAGAGGAGGCTGCCAATGCCAAAATGTTGGAGGCGGAAAAGCGAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
83%=100=83%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.545 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATGGCCGCAGAGGAGAG
R:
CTTTATTCGCTTTTCCGCCTCC
Band lengths:
127-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]