MmuEX6101466 @ mm9
Exon Skipping
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59773272-59780880:-
Coord C1 exon
chr2:59780819-59780880
Coord A exon
chr2:59774743-59774808
Coord C2 exon
chr2:59773272-59773337
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTTCATCATTTTTTTACAGGAA
3' ss Score
10.04
5' ss Seq
GAGGTAGAA
5' ss Score
4.54
Exon sequences
Seq C1 exon
CGATAATGGCTGCGGAAGAGAAGCGCAAACAGAAAGAACAGATGAAGATTATAAAGCAGCAG
Seq A exon
GAAAAAATTAAGAGAATACAGCAAATCAGAATGGAGAAAGAACTGAGAGCTCAGCAGATTCTCGAG
Seq C2 exon
GCTAAAAAGAAAAAGAAGGAAGAAGCGGCAAATGCCAAATTATTGGAGGCCGAGAAACGAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-'40-34,'40-33,42-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.527 C2=0.955
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGATAATGGCTGCGGAAGAGA
R:
CTTGGTTCGTTTCTCGGCCTC
Band lengths:
128-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: