BtaEX6009646 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004184 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26697]
Coordinates
chr2:37167345-37171753:+
Coord C1 exon
chr2:37167345-37167410
Coord A exon
chr2:37169435-37169882
Coord C2 exon
chr2:37171569-37171753
Length
448 bp
Sequences
Splice sites
3' ss Seq
TGTATTTATTTGATTCCTAGGAT
3' ss Score
7.15
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GGCGTTTTGGGTCTTCGACGTGAAAGGACCAGTGCCCAAGGGCCAGTTTAGCAGCAGCGGTGGCAG
Seq A exon
GATGAAGTAACGTTTATCTAAAAACTGCAGGATATTTTCCAGTAAAGAACATGGTGGAACTAATTCACACATTAGCAGATCATAATGATGATGTCAACTGCTGTGCCTTCTCCTCTTCCCTCTTGGCTACTTGTGCCTTGGACAAAACAATTCGCCTATATTTCCTGAGTGACTTTACCGAAGTACCATACTCTCCATTGAAGTTTCACACCTATGCTGTCCACTGCTGCTGTTTCTCCCCTTCAGGACATATTTTGGCTTCATGTTCAACAGATGGTACCACTGTCCTATGGGATACTCAAAACGGGCAGATTTTGGCAGTGATGGAACAGCCCAGTGGTAGCCCTGTGAGAGTTTGCCGATTTTCCCCAGACTCCACTTGTTTGGTGTCAGGGGCATCTGATGGAACTGTTGTTTTGTGGAATGCACAGTCATACAAGTTACATAG
Seq C2 exon
ATGTGCTAGTGTTAAGGATGGCTCCTTAGTGGCCTGTGCGTTTTTTCCTCCTGGAAACCTCTTTGTCACTGGCTCCTCATGTGGTGATTTAACAGTGTGGGATGATAAAATGAGGTGTCTGCACAGTGAAAAAGCACATGATCTTGGAATTACCTGCTGTGACTTTTCTTCACAACCAGTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004184-'2-6,'2-1,10-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0040027=WD40=WD(100=27.1),PF0040027=WD40=WD(100=28.6),PF0040027=WD40=WD(100=23.3)
C2:
PF0040027=WD40=WD(100=46.0),PF0040027=WD40=PU(52.1=39.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTTGGGTCTTCGACGTGA
R:
AGGAACTGGTTGTGAAGAAAAGTCA
Band lengths:
248-696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]