GgaEX1064130 @ galGal3
Exon Skipping
Gene
ENSGALG00000012574 | WSDU1_CHICK
Description
NA
Coordinates
chr7:38179623-38186050:-
Coord C1 exon
chr7:38185720-38186050
Coord A exon
chr7:38182834-38183236
Coord C2 exon
chr7:38179623-38179807
Length
403 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTTTTGGAAGTAGATG
3' ss Score
4.11
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCGGGGCAGCCTGCAAAGGTTCTTGTGAAGGCGGTGCGTGGTGGCCCGCGTCCTCCCGTCGGTTATTTTATTTATTTTATTTATTTTATTTTATTTTATTTCTTATTTTATTTTGAGAGGGAGGTCAGGGAGCCGAAGCGAGGGCTCCCAGAGCCACCCTCGGGTCTGGCAGGGATGGTACGGTCCGTTCCCGGGGACCCGCAACAGGCGCTGCTGTCCCCGCGGCCTCCGAGTACGGCGGCTGCCGTCCTTGCGGAAGGGCTGCGAGGCTGAACGCCGCGCCGTGCGGGCCCTTCTGAGCGCTGCCCTGAATCTGTCGCCGGAGATCGAA
Seq A exon
ATGGAATGGCGACATTAATTCACACTTTAACAGATCACAGTGATGATGTCAACTGCTGTGCCTTCTCATCATCGTGCTTGGCTACTTGTTCCTTGGACAAAACAATTCGTATTTACTCTTTAAATGACTTCACTGAGCTCCCATACTCACCTTTGAAAGGTCATACATATGCTGTCCACTGCTGCTGCTTCTCTCCATCAGGACACACTTTAGCTTCGTGTTCAACAGACGGTGCTACCATCATTTGGGACACTAGCGATGGTCGGATGCTGGCAGTGCTGGAGCAGCCCACTGGCAGTCCTGTCAGAGTCTGCCGCTTTTCTCCCGAGTCCACTTACCTGGTGTCAGGTGCAGCTGATGGAAGTGTCGTTCTTTGGAACGTGCACTCAATGAAATTCTACAG
Seq C2 exon
ATCTGGGAATGTTAAAGATGGTTCTTTGGTGGCCTGTGCGTTTTCTCCAGGTGGAAATTTCTTTGTTACTGGATCATCATGTGGTGATCTGACTGTTTGGGATGATAAAATGAGATGTCTCTGTAATGAAAAAGCACATGATCTTGGCGTTACCTGCTGTGATATTTCTTCACATCCAGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574-'1-9,'1-6,5-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0040027=WD40=WD(100=27.8),PF0040027=WD40=WD(100=28.6),PF0040027=WD40=WD(100=23.3)
C2:
PF0040027=WD40=WD(100=46.0),PF0040027=WD40=PU(52.1=39.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTTCTTGTGAAGGCGGTG
R:
CACAGGCCACCAAAGAACCAT
Band lengths:
354-757
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]