RnoEX6016949 @ rn6
Exon Skipping
Gene
ENSRNOG00000005990 | Wdsub1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:RGD Symbol;Acc:1359296]
Coordinates
chr3:45951176-45955449:-
Coord C1 exon
chr3:45955275-45955449
Coord A exon
chr3:45952315-45952735
Coord C2 exon
chr3:45951176-45951360
Length
421 bp
Sequences
Splice sites
3' ss Seq
ACTGGTTTAAAAACTCGCAGGCT
3' ss Score
4.62
5' ss Seq
TAGGTACGG
5' ss Score
7.82
Exon sequences
Seq C1 exon
GCCAGACTCTGCCCAGTGAGCTGCCCAGCCCGGGGCCGAGCCCGGGGTAGTCGTGCAGCCTTCGTGACCTCAGAACCCGGCGGTTCCCGCGCCGGGCAAGCGTGACCTCGACCGCGGGGAACCGTAAGGGGAGGAGCCGCCCGGAGGCGGGACTGTCAGTCCGGGTGCGAGGGAA
Seq A exon
GCTGTTTACCTTGCGTGAGGAACATGGTGAAGCTGATTCACACACTGGCGGATCACGGTGATGACGTCAGCTGCTGCGCCTTCTCATCCACGCTCCTGGCCACCTGCTCCTTGGACAAGACCATCCGCCTGTACTCCCTAAGTGACTTTGCTGAACTGCCGCACTCCCCGTTGAAGTTTCACACGTATGCCGTCCACTGCTGCAGCTTCTCGCCGTCAGGACACGTTTTGGCGTCGTGCTCGACAGACGGTACTACGGTACTGTGGAGCGCGCACAGCGGACACACCCTGACGGTGTTGGAGCAGCCGGGTGGAAGCCCCGTGCGCGTTTGCTGCTTTTCGCCGGACTCCACCTACCTGGCATCAGGGGCTGCCGATGGGTCTGTTGTTTTGTGGAACGCACATTCATACAAATTATATAG
Seq C2 exon
GTGTGGTAGTGTCAAGGACAGCTCATTGGTGGCCTGTGCGTTTTCTCCTGACGGAGGCCTCCTTGTCACTGGCTCCTCGGGAGGGGACTTGACAGTGTGGGATGACAGAATGAGGTGTCTGCACAGCGAGAAGGCACACGACCTCGGGATCACCTGCTGCAGCTTTTCCTCACAGCCTCTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005990-'2-4,'2-2,7-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0040027=WD40=WD(100=27.8),PF0040027=WD40=WD(100=28.6),PF0040027=WD40=WD(100=28.6)
C2:
PF0040027=WD40=WD(100=46.0),PF0040027=WD40=PU(52.1=39.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCTGCCCAGTGAGCTG
R:
TGTGAGGAAAAGCTGCAGCAG
Band lengths:
346-767
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]