GgaEX1064130 @ galGal4
Exon Skipping
Gene
ENSGALG00000012574 | WDSUB1
Description
WD repeat, SAM and U-box domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001026434]
Coordinates
chr7:36043287-36049713:-
Coord C1 exon
chr7:36049383-36049713
Coord A exon
chr7:36046498-36046900
Coord C2 exon
chr7:36043287-36043471
Length
403 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTTTTGGAAGTAGATG
3' ss Score
3.85
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCGGGGCAGCCTGCAAAGGTTCTTGTGAAGGCGGTGCGTGGTGGCCCGCGTCCTCCCGTCGGTTATTTTATTTATTTTATTTATTTTATTTTATTTTATTTCTTATTTTATTTTGAGAGGGAGGTCAGGGAGCCGAAGCGAGGGCTCCCAGAGCCACCCTCGGGTCTGGCAGGGATGGTACGGTCCGTTCCCGGGGACCCGCAACAGGCGCTGCTGTCCCCGCGGCCTCCGAGTACGGCGGCTGCCGTCCTTGCGGAAGGGCTGCGAGGCTGAACGCCGCGCCGTGCGGGCCCTTCTGAGCGCTGCCCTGAATCTGTCGCCGGAGATCGAA
Seq A exon
ATGGAATGGCGACATTAATTCACACTTTAACAGATCACAGTGATGATGTCAACTGCTGTGCCTTCTCATCATCGTGCTTGGCTACTTGTTCCTTGGACAAAACAATTCGTATTTACTCTTTAAATGACTTCACTGAGCTCCCATACTCACCTTTGAAAGGTCATACATATGCTGTCCACTGCTGCTGCTTCTCTCCATCAGGACACACTTTAGCTTCGTGTTCAACAGACGGTGCTACCATCATTTGGGACACTAGCGATGGTCGGATGCTGGCAGTGCTGGAGCAGCCCACTGGCAGTCCTGTCAGAGTCTGCCGCTTTTCTCCCGAGTCCACTTACCTGGTGTCAGGTGCAGCTGATGGAAGTGTCGTTCTTTGGAACGTGCACTCAATGAAATTCTACAG
Seq C2 exon
ATCTGGGAATGTTAAAGATGGTTCTTTGGTGGCCTGTGCGTTTTCTCCAGGTGGAAATTTCTTTGTTACTGGATCATCATGTGGTGATCTGACTGTTTGGGATGATAAAATGAGATGTCTCTGTAATGAAAAAGCACATGATCTTGGCGTTACCTGCTGTGATATTTCTTCACATCCAGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574-'2-13,'2-6,9-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0040027=WD40=WD(100=27.8),PF0040027=WD40=WD(100=28.6),PF0040027=WD40=WD(100=23.3)
C2:
PF0040027=WD40=WD(100=46.0),PF0040027=WD40=PU(52.1=39.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTTCTTGTGAAGGCGGTG
R:
CACAGGCCACCAAAGAACCAT
Band lengths:
354-757
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]