HsaEX0071438 @ hg38
Exon Skipping
Gene
ENSG00000196151 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26697]
Coordinates
chr2:159279761-159286799:-
Coord C1 exon
chr2:159286583-159286799
Coord A exon
chr2:159282672-159283093
Coord C2 exon
chr2:159279761-159279945
Length
422 bp
Sequences
Splice sites
3' ss Seq
TATCTGCTTAAAAATTTCAGGCT
3' ss Score
5.01
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
GGGGCCTACTCCCTCCGCTCTGGGTCACAGCGGGCGTTCGGGGGGCGGGGCCTGTTCCCTCCGCTCTGGGTCCCCGCGGGCGTTCGGGGGCGGGGCCTGTTCCCTCTGCTCTGGGTCTCCGCCGGCGCCCGCCCCGCCAGCCTCACCTGCGCGGCACGTGACCCGCACCGCCCGTGGGCACCTTGAAGGCGGATCCCGCGCGCCCCCGCTCCTGCAG
Seq A exon
GCTGTTTTTCTTCAAATAAAGAACATGGTGAAACTGATTCACACATTAGCTGATCATGGTGACGATGTCAACTGCTGTGCCTTCTCCTTTTCCCTCTTGGCTACTTGCTCCTTGGACAAAACAATTCGCCTGTACTCGTTACGTGACTTTACTGAACTGCCACATTCTCCATTGAAGTTTCATACCTATGCTGTCCACTGCTGCTGTTTCTCCCCTTCAGGACATATTTTGGCATCGTGTTCAACAGATGGTACCACTGTCCTATGGAATACTGAAAATGGACAGATGCTGGCAGTGATGGAACAGCCTAGTGGCAGCCCTGTGAGGGTTTGCCAGTTTTCCCCAGACTCCACGTGTTTGGCATCAGGGGCAGCTGATGGAACTGTGGTTTTGTGGAATGCACAGTCATACAAATTATATAG
Seq C2 exon
ATGTGGTAGTGTTAAAGATGGCTCCTTGGCGGCATGTGCATTTTCTCCTAATGGAAGCTTCTTTGTCACTGGCTCCTCATGTGGTGATTTAACAGTGTGGGATGATAAAATGAGGTGTCTGCATAGTGAAAAAGCACATGATCTTGGAATTACCTGCTGCGATTTTTCTTCACAGCCAGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196151_MULTIEX1-1/13=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0040027=WD40=WD(100=27.8),PF0040027=WD40=WD(100=28.6),PF0040027=WD40=WD(100=23.3)
C2:
PF0040027=WD40=WD(100=46.0),PF0040027=WD40=PU(52.1=39.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCCTCCGCTCTGGG
R:
TGGCTGTGAAGAAAAATCGCA
Band lengths:
343-765
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development