MmuEX0052112 @ mm10
Exon Skipping
Gene
ENSMUSG00000026988 | Wdsub1
Description
WD repeat, SAM and U-box domain containing 1 [Source:MGI Symbol;Acc:MGI:1919387]
Coordinates
chr2:59876667-59882584:-
Coord C1 exon
chr2:59882401-59882584
Coord A exon
chr2:59878130-59878531
Coord C2 exon
chr2:59876667-59876851
Length
402 bp
Sequences
Splice sites
3' ss Seq
GGCTGTTTACTTTGTGTGAGGAA
3' ss Score
-0.88
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
TGAGTCGGGCTCTGCCTAGTGAGCAGCCCAGCCCAGCAGCCCAGCTCGGGGCCCAGCCCGGGGCCGAGCCCGGGGCAGTGCAGACTTGGTGACCTCAGAACCCGGAGGTGCGTGACCTCGACCCCGGAGCCGCGCAGGGGAGGAGCCGCCCGGAGGCGGGACTCTCAGTCCGGGTGCGAGGGAA
Seq A exon
GAACATGGTGAGGCTGATTCACACGCTGGCTGATCACGGTGATGACGTCAGCTGCTGCGCCTTCTCGGCTGCCCTCCTGGCCACCTGCTCCTTGGACAAGACCATCCGCCTGTACTCCCTAAGTGACTTTGCTGAACTGCCGTACTCCCCGCTGAAGTTCCACACCTATGCTGTCCACTGCTGCTGTTTCTCACCCTCAGGACACGTTTTAGCATCGTGCTCGACAGACGGGACCACGGTGCTGTGGAGCTCGCACAGCGGACACACCCTGACCGTGTTGGAGCAGCCGGGTGGCAGCCCTGTGCGCGTCTGTTGCTTTTCCCCAGACTCTGCCTACCTAGCGTCAGGGGCTGCCGATGGATCCATTGCTTTGTGGAATGCACAGACATACAAACTATATAG
Seq C2 exon
GTGTGGTAGTGTCAAGGATAGCTCATTGGTGGCCTGTGCGTTTTCTCCCGATGGAGGCCTCTTTGTCACTGGCTCCTCGGGCGGGGACTTGACAGTGTGGGATGACAGAATGAGGTGTCTACACAGCGAGAAGGCGCACGATCTCGGGATCACCTGCTGCAGCTTTTCCTCACAGCCTCTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026988_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0040027=WD40=WD(100=27.1),PF0040027=WD40=WD(100=27.8),PF0040027=WD40=WD(100=30.1)
C2:
PF0040027=WD40=WD(100=46.0),PF0040027=WD40=PU(52.1=39.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCTAGTGAGCAGCCC
R:
TGTGAGGAAAAGCTGCAGCAG
Band lengths:
349-751
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types