HsaEX0071438 @ hg19
Exon Skipping
Gene
ENSG00000196151 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:26697]
Coordinates
chr2:160136272-160143310:-
Coord C1 exon
chr2:160143094-160143310
Coord A exon
chr2:160139183-160139604
Coord C2 exon
chr2:160136272-160136456
Length
422 bp
Sequences
Splice sites
3' ss Seq
TATCTGCTTAAAAATTTCAGGCT
3' ss Score
5.01
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
GGGGCCTACTCCCTCCGCTCTGGGTCACAGCGGGCGTTCGGGGGGCGGGGCCTGTTCCCTCCGCTCTGGGTCCCCGCGGGCGTTCGGGGGCGGGGCCTGTTCCCTCTGCTCTGGGTCTCCGCCGGCGCCCGCCCCGCCAGCCTCACCTGCGCGGCACGTGACCCGCACCGCCCGTGGGCACCTTGAAGGCGGATCCCGCGCGCCCCCGCTCCTGCAG
Seq A exon
GCTGTTTTTCTTCAAATAAAGAACATGGTGAAACTGATTCACACATTAGCTGATCATGGTGACGATGTCAACTGCTGTGCCTTCTCCTTTTCCCTCTTGGCTACTTGCTCCTTGGACAAAACAATTCGCCTGTACTCGTTACGTGACTTTACTGAACTGCCACATTCTCCATTGAAGTTTCATACCTATGCTGTCCACTGCTGCTGTTTCTCCCCTTCAGGACATATTTTGGCATCGTGTTCAACAGATGGTACCACTGTCCTATGGAATACTGAAAATGGACAGATGCTGGCAGTGATGGAACAGCCTAGTGGCAGCCCTGTGAGGGTTTGCCAGTTTTCCCCAGACTCCACGTGTTTGGCATCAGGGGCAGCTGATGGAACTGTGGTTTTGTGGAATGCACAGTCATACAAATTATATAG
Seq C2 exon
ATGTGGTAGTGTTAAAGATGGCTCCTTGGCGGCATGTGCATTTTCTCCTAATGGAAGCTTCTTTGTCACTGGCTCCTCATGTGGTGATTTAACAGTGTGGGATGATAAAATGAGGTGTCCGCATAGTGAAAAAGCACATGATCTTGGAATTACCTGCTGCGATTTTTCTTCACAGCCAGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196151-'0-2,'0-1,3-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0040027=WD40=WD(100=27.8),PF0040027=WD40=WD(100=28.6),PF0040027=WD40=WD(100=23.3)
C2:
PF0040027=WD40=WD(100=46.0),PF0040027=WD40=PU(52.1=39.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTCCCTCCGCTCTGGG
R:
GCTTTTTCACTATGCGGACACC
Band lengths:
347-769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)