BtaEX6010722 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005408 | CLK1
Description
CDC-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:2068]
Coordinates
chr2:89923423-89925182:-
Coord C1 exon
chr2:89925092-89925182
Coord A exon
chr2:89924628-89924694
Coord C2 exon
chr2:89923423-89923539
Length
67 bp
Sequences
Splice sites
3' ss Seq
GTTTTATTTCTCTCTTTTAGATG
3' ss Score
12.51
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
AAGAGTCACCGAAGGAAAAGAACCAGGAGTGTAGAGGATGATGAGGAGGGTCACCTGATCTGTCAGAGTGGAGACGTACTAAGTGCAAGAT
Seq A exon
ATGAAATTGTTGATACTTTAGGTGAAGGAGCTTTTGGAAAAGTTGTGGAGTGCATTGATCATAAAGC
Seq C2 exon
GGGAGGTAGACATGTAGCAGTAAAAATAGTTAAAAATGTGGATAGATATTGTGAAGCAGCTCGCTCAGAAATACAAGTTCTGGAACACTTAAATACAACAGACCCTAGCAGTACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005408-'9-6,'9-5,10-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105774=UPF0560=FE(16.5=100),PF0006920=Pkinase=PU(0.1=0.0)
A:
PF105774=UPF0560=FE(12.1=100),PF0006920=Pkinase=PU(6.9=95.7)
C2:
PF105774=UPF0560=PD(2.2=10.0),PF0006920=Pkinase=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGATGAGGAGGGTCACC
R:
TGTACTGCTAGGGTCTGTTGT
Band lengths:
172-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]