MmuEX6024516 @ mm10
Exon Skipping
Gene
ENSMUSG00000026034 | Clk1
Description
CDC-like kinase 1 [Source:MGI Symbol;Acc:MGI:107403]
Coordinates
chr1:58417267-58421308:-
Coord C1 exon
chr1:58421083-58421308
Coord A exon
chr1:58419667-58419733
Coord C2 exon
chr1:58417267-58417383
Length
67 bp
Sequences
Splice sites
3' ss Seq
TAATTATTCCTCTTTTTTAGATG
3' ss Score
9.68
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CTATTATCTGGAAAGCAGATCCATAAATGAGAAAGCTTATCATAGTCGACGCTATGTTGATGAATACAGGAATGACTACATGGGCTACGAGCCAGGGCATCCCTATGGAGAACCTGGAAGCAGATACCAGATGCATAGTAGCAAGTCCTCTGGTAGGAGTGGAAGAAGCAGTTACAAAAGTAAACACAGGAGTCGCCACCACACTTCGCAGCACCATTCACACGGG
Seq A exon
ATGAAATTGTTGATACTTTAGGTGAAGGTGCTTTCGGAAAAGTGGTGGAATGCATCGATCATAAAGT
Seq C2 exon
GGGAGGTAGACGTGTAGCAGTAAAAATAGTTAAAAATGTGGATAGATACTGTGAAGCTGCTCAATCGGAAATACAAGTTTTGGAACACTTGAATACAACAGACCCCCATAGTACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026034-'11-16,'11-10,13-16=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.785 A=0.343 C2=0.025
Domain overlap (PFAM):
C1:
PF105774=UPF0560=FE(42.4=100)
A:
PF105774=UPF0560=FE(12.4=100),PF0006920=Pkinase=PU(6.9=95.7)
C2:
PF105774=UPF0560=PD(1.1=5.0),PF0006920=Pkinase=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTACATGGGCTACGAGC
R:
ACTGCTACACGTCTACCTCCC
Band lengths:
176-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types