HsaEX7001682 @ hg38
Exon Skipping
Gene
ENSG00000013441 | CLK1
Description
CDC like kinase 1 [Source:HGNC Symbol;Acc:HGNC:2068]
Coordinates
chr2:200857973-200860215:-
Coord C1 exon
chr2:200860125-200860215
Coord A exon
chr2:200859680-200859746
Coord C2 exon
chr2:200857973-200858089
Length
67 bp
Sequences
Splice sites
3' ss Seq
GATTTATTTCTCTCTTTTAGATG
3' ss Score
11.67
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
AAGAGTCACCGAAGGAAAAGAACCAGGAGTGTAGAGGATGATGAGGAGGGTCACCTGATCTGTCAGAGTGGAGACGTACTAAGTGCAAGAT
Seq A exon
ATGAAATTGTTGATACTTTAGGTGAAGGAGCTTTTGGAAAAGTTGTGGAGTGCATCGATCATAAAGC
Seq C2 exon
GGGAGGTAGACATGTAGCAGTAAAAATAGTTAAAAATGTGGATAGATACTGTGAAGCTGCTCGCTCAGAAATACAAGTTCTGGAACATCTGAATACAACAGACCCCAACAGTACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000013441-'28-16,'28-13,30-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=0.077 C2=0.023
Domain overlap (PFAM):
C1:
PF105774=UPF0560=FE(16.7=100),PF0006920=Pkinase=PU(0.1=0.0)
A:
PF105774=UPF0560=FE(12.2=100),PF0006920=Pkinase=PU(11.3=95.7)
C2:
PF105774=UPF0560=PD(2.8=12.5),PF0006920=Pkinase=FE(20.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGATGAGGAGGGTCACC
R:
AGTACTGTTGGGGTCTGTTGT
Band lengths:
172-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains