GgaEX7005853 @ galGal4
Exon Skipping
Gene
ENSGALG00000028438 | CLK1
Description
CDC-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:2068]
Coordinates
chr7:10800687-10802815:-
Coord C1 exon
chr7:10802725-10802815
Coord A exon
chr7:10802221-10802287
Coord C2 exon
chr7:10800687-10800803
Length
67 bp
Sequences
Splice sites
3' ss Seq
GACGGTTCTTTTCTTTATAGATG
3' ss Score
9.22
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGGAGCCATCGAAGGAAAAGATCCAGGAGTGTAGAGGATGATGAGGAGGGTCACCTGATCTGTCAGAGTGGAGACGTACTAAGTGCAAGAT
Seq A exon
ATGAGATTGTTGCTACTTTGGGTGAAGGAGCTTTTGGAAAAGTGGTGGAATGCATCGATCACAAAGC
Seq C2 exon
GGGAGGTAGACATGTAGCTGTGAAAATAGTAAAAAATGTGGATAGGTACTCTGAAGCAGCACGTTCAGAAGTACAAGTACTGGAACATTTAAATGCATCAGACCCCAGCAATACATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028438-'7-4,'7-3,8-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.1=0.0)
A:
PF0006920=Pkinase=PU(6.9=95.7)
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGATGAGGAGGGTCACC
R:
TTGCTGGGGTCTGATGCATTT
Band lengths:
168-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]