RnoEX6039888 @ rn6
Exon Skipping
Gene
ENSRNOG00000025768 | Clk1
Description
CDC-like kinase 1 [Source:RGD Symbol;Acc:1311469]
Coordinates
chr9:65301998-65304384:-
Coord C1 exon
chr9:65304294-65304384
Coord A exon
chr9:65303837-65303903
Coord C2 exon
chr9:65301998-65302114
Length
67 bp
Sequences
Splice sites
3' ss Seq
TATGTATTCCTCTTTTTTAGATG
3' ss Score
10.39
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
AAGAGTCACCGAAGGAAAAGATCGAGGAGTGTAGAGGATGATGAGGAGGGTCACCTGATCTGTCAGAGTGGAGACGTACTAAGTGCAAGAT
Seq A exon
ATGAAATTGTTGATACTTTAGGTGAAGGTGCTTTTGGAAAAGTGGTGGAGTGTATCGATCATAAAGT
Seq C2 exon
GGGAGGTAGACATGTAGCGGTAAAAATAGTTAAAAATGTGGATAGATACTGTGAAGCTGCTCAATCGGAAATACAAGTTTTGGAACACTTAAATGCAACAGACCCCCATAGTACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025768-'8-10,'8-5,9-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105774=UPF0560=FE(17.1=100),PF0006920=Pkinase=PU(0.1=0.0)
A:
PF105774=UPF0560=PD(11.6=87.0),PF0006920=Pkinase=PU(73.3=95.7)
C2:
PF105774=UPF0560=PD(0.1=0.0),PF0006920=Pkinase=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGATGAGGAGGGTCACC
R:
AGTACTATGGGGGTCTGTTGCA
Band lengths:
172-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]