BtaEX6011837 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017258 | ACSL3
Description
acyl-CoA synthetase long-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:3570]
Coordinates
chr2:111874574-111878482:+
Coord C1 exon
chr2:111874574-111874713
Coord A exon
chr2:111876617-111876789
Coord C2 exon
chr2:111878408-111878482
Length
173 bp
Sequences
Splice sites
3' ss Seq
GATTGGATTTTTTTTTTTAGCTT
3' ss Score
7.4
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GAAATCATGGATCGAATCTACAAAAATGTCATGAATAAAGTGAATGAAATGAGCAGTTTTCAACGCAATCTGTTTATTCTGGCCTATAATTACAAAATGGAACAGATTTCAAAAGGGCACAGTACTCCGCTGTGTGATAG
Seq A exon
CTTTATTTTCCGGAAAGTTCGAGGCTTGCTAGGTGGAAATATTCGACTTCTGTTGTGTGGAGGTGCTCCACTTTCTGCAACCACACAGCGATTCATGAACATCTGTTTTTGCTGTCCTGTTGGTCAGGGGTATGGACTCACTGAATCTTGTGGGGCTGGAACAATTACAGAAG
Seq C2 exon
TGTGGGACTACAATACTGGCAGAGTGGGAGCACCATTAGTTTGCTGTGAAATCAAATTAAAGAACTGGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017258-'20-16,'20-15,21-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.7=100)
A:
PF0050123=AMP-binding=FE(12.2=100)
C2:
PF0050123=AMP-binding=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGATCGAATCTACAAAAATGTCA
R:
CTTCCTCCCAGTTCTTTAATTTGAT
Band lengths:
210-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]