GgaEX1006045 @ galGal3
Exon Skipping
Gene
ENSGALG00000005206 | ACSL3
Description
NA
Coordinates
chr9:9160981-9162526:+
Coord C1 exon
chr9:9160981-9161120
Coord A exon
chr9:9161256-9161428
Coord C2 exon
chr9:9162452-9162526
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTCTTATCTTTGTATTTTAGCCT
3' ss Score
8.56
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GAAATTATGGATCGAATCTACAAAAATGTCATGAATAAGGTAAATGAAATGACGAGTTTCCAGCGAAATCTATTTATATTGGCCTACAATTACAAAATGGAACAGATTTCCAAAGGTTACACGACCCCACTCTGCGATAG
Seq A exon
CCTTATTTTCCGGAAAGTACGAATGCTGCTAGGTGGAAAAATTCGCATCCTGCTTTGTGGAGGAGCTCCACTCTCAGCAGCAACGCAGCGATTTATGAACATTTGTTTCTGTTGCCCTGTAGGGCAGGGGTATGGGCTCACTGAGTCAGCTGGAGCTGGAACAATCACAGAAG
Seq C2 exon
TTTGGGACTACACTACAGGGAGAGTGGGAGCACCTTTGGTTTGCTGTGAAATCAAGTTACTGAACTGGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005206-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.6=100)
A:
PF0050123=AMP-binding=FE(12.1=100)
C2:
PF0050123=AMP-binding=FE(5.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGATCGAATCTACAAAAATGTCA
R:
CTTCTTCCCAGTTCAGTAACTTGA
Band lengths:
210-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]