RnoEX6040537 @ rn6
Exon Skipping
Gene
ENSRNOG00000014718 | Acsl3
Description
acyl-CoA synthetase long-chain family member 3 [Source:RGD Symbol;Acc:70552]
Coordinates
chr9:84583411-84586211:+
Coord C1 exon
chr9:84583411-84583550
Coord A exon
chr9:84585415-84585587
Coord C2 exon
chr9:84586137-84586211
Length
173 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTAATGATATTTCAGCTT
3' ss Score
5.64
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GAAATCATGGATCGGATCTACAAAAATGTCATGAATAAAGTGAATGAAATGAGTGCTTTTCAACGAAACTTGTTTATTTTGGCATATAATTATAAGATGGAGCAGATTTCAAAAGGGTGTAGTACCCCACTGTGTGACCG
Seq A exon
CTTTGTTTTCCGGAATGTCCGAAGGCTGCTGGGTGGAAATATTCGCGTTTTATTGTGCGGTGGTGCTCCACTTTCTGCAACGACACAGCGATTCATGAATATCTGCTTCTGTTGTCCCGTTGGCCAGGGGTATGGACTCACAGAATCTACTGGGGCTGGAACAATTACAGAAG
Seq C2 exon
TGTGGGACTACAATACCGGCAGAGTGGGAGCACCATTAGTTTGCTGTGAAATCAAATTAAAGAACTGGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014718-'11-13,'11-11,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.7=100)
A:
PF0050123=AMP-binding=FE(12.2=100)
C2:
PF0050123=AMP-binding=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGATCGGATCTACAAAAATGTCA
R:
CTTCCTCCCAGTTCTTTAATTTGAT
Band lengths:
210-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]