MmuEX6025663 @ mm10
Exon Skipping
Gene
ENSMUSG00000032883 | Acsl3
Description
acyl-CoA synthetase long-chain family member 3 [Source:MGI Symbol;Acc:MGI:1921455]
Coordinates
chr1:78696890-78699830:+
Coord C1 exon
chr1:78696890-78697029
Coord A exon
chr1:78698996-78699168
Coord C2 exon
chr1:78699756-78699830
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTTGCTACTTTCAGCTT
3' ss Score
8.85
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GAAATCATGGATCGGATCTACAAAAATGTCATGAATAAAGTGAATGAAATGAGTGCTTTTCAACGAAACTTGTTTATTTTGGCATATAATTATAAGATGGAACAGATTTCAAAAGGGTGTAGTACTCCACTGTGTGACCG
Seq A exon
CTTTGTTTTCCGGAATGTCCGAAGGCTGCTGGGTGGAAATATTCGCCTTTTACTGTGTGGTGGTGCTCCGCTTTCTGCAACAACGCAGCGATTCATGAATATCTGTTTCTGCTGTCCCGTTGGTCAGGGGTATGGACTCACAGAATCTACTGGGGCTGGAACAATTACAGAAG
Seq C2 exon
TGTGGGACTACAATACCGGCAGAGTGGGAGCACCATTAGTTTGCTGTGAAATCAAATTAAAGAACTGGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032883-'32-37,'32-29,35-37=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.6=100)
A:
PF0050123=AMP-binding=FE(12.2=100)
C2:
PF0050123=AMP-binding=FE(5.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGATCGGATCTACAAAAATGTCA
R:
CTTCCTCCCAGTTCTTTAATTTGAT
Band lengths:
210-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types