GgaEX1006045 @ galGal4
Exon Skipping
Gene
ENSGALG00000005206 | ACSL3
Description
acyl-CoA synthetase long-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:3570]
Coordinates
chr9:7579774-7581288:+
Coord C1 exon
chr9:7579774-7579913
Coord A exon
chr9:7580049-7580221
Coord C2 exon
chr9:7581245-7581288
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTCTTATCTTTGTATTTTAGCCT
3' ss Score
8.56
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GAAATTATGGATCGAATCTACAAAAATGTCATGAATAAGGTAAATGAAATGACGAGTTTCCAGCGAAATCTATTTATATTGGCCTACAATTACAAAATGGAACAGATTTCCAAAGGTTACACGACCCCACTCTGCGATAG
Seq A exon
CCTTATTTTCCGGAAAGTACGAATGCTGCTAGGTGGAAAAATTCGCATCCTGCTTTGTGGAGGAGCTCCACTCTCAGCAGCAACGCAGCGATTTATGAACATTTGTTTCTGTTGCCCTGTAGGGCAGGGGTATGGGCTCACTGAGTCAGCTGGAGCTGGAACAATCACAGAAG
Seq C2 exon
TTTGGGACTACACTACAGGGAGAGTGGGAGCACCTTTGGTTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005206-'13-13,'13-12,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.6=100)
A:
PF0050123=AMP-binding=FE(12.2=100)
C2:
PF0050123=AMP-binding=FE(2.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGATCGAATCTACAAAAATGTCA
R:
CAAACCAAAGGTGCTCCCACT
Band lengths:
178-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]