DreEX0010826 @ danRer10
Exon Skipping
Gene
ENSDARG00000014674 | acsl3b
Description
acyl-CoA synthetase long-chain family member 3b [Source:ZFIN;Acc:ZDB-GENE-030131-492]
Coordinates
chr2:47650626-47656124:+
Coord C1 exon
chr2:47650626-47650765
Coord A exon
chr2:47653672-47653844
Coord C2 exon
chr2:47656050-47656124
Length
173 bp
Sequences
Splice sites
3' ss Seq
AGTGTTTGTGTGTTCTGCAGGCT
3' ss Score
9.05
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
GAGATTATGGATCGTATCTATAAGAATGTGATGACTAAAGTTGAAGAGATGAGCAGTGTCCAGAAAACACTCTTTGTTTTGGCGTACAACTACAAAATGGAGCAGATCTCCAAAGGATACACCACACCGCTCTGCGACAG
Seq A exon
GCTGGTTTTCAGGAAGGTTCGCTCATTGCTGGGTGGTAACACGCGTGTGCTGTTGTCTGGTGGAGCTCCTTTATCTGCAGCTACTCAGCGGTTTATGAACATCTGTTTCTGCTGTCCTGTGGGACAAGGCTACGGCCTCACAGAGACCTGCGGAGCCGGGACCATCAGCGAGA
Seq C2 exon
TGTCTGATTACAGCACTGGCCGTGTTGGAGCTCCTCTGGTATGTTCAGAGATCATGCTGAAGGACTGGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014674-'18-20,'18-19,19-20
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.6=100)
A:
PF0050123=AMP-binding=FE(12.2=100)
C2:
PF0050123=AMP-binding=FE(5.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAATGTGATGACTAAAGTTGAAGA
R:
CTTCCTCCCAGTCCTTCAGCA
Band lengths:
194-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]