BtaEX6011950 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021310 | COL4A4
Description
collagen, type IV, alpha 4 [Source:HGNC Symbol;Acc:HGNC:2206]
Coordinates
chr2:115972455-115977024:-
Coord C1 exon
chr2:115976908-115977024
Coord A exon
chr2:115974742-115974930
Coord C2 exon
chr2:115972455-115972741
Length
189 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCTTTATTCTTCTAGGCC
3' ss Score
10.04
5' ss Seq
TCGGTACGT
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGTGCAAAGGAGAGCCTGGGCTGGATGGCAGGAGGGGTGAGGATGGCCTCCCAGGGTCCCCTGGGCCTCCGGGACATAAAGGTGACATGGGAGAAGCAGGCTGTCCAGGAGCACCAG
Seq A exon
GCCCTCCTGGGCCCATGGGGGATCCTGGGCCCATAGGGTTTGGCCCTGGATACCTCAGTGGCTTCCTCCTGGTTCTCCACAGTCAGACGGATGGAGAACCCACCTGCCCCATGGGCATGCCCAGGCTCTGGACTGGGTATAGTCTGCTATACCTGGAAGGACAGGAGAGAGCTCACAATCAAGACCTCG
Seq C2 exon
GTCTGGCGGGCTCCTGCCTCCCCATCTTTAGCACGCTGCCCTTCGCCTACTGCAACATCCACCAGGTGTGCCACTATGCCCGGAGGAACGACAGGTCCTACTGGCTGGCGAGCACAGCGCCTCTGCCCATGACTCCGCTCTCGGAGGACGAGATCCGCCCGTACATCAGCCGCTGCGCAGTGTGCGAGGCCCCCGCCCAGGCCGTGGCGGTGCACAGCCAAGACCAGTCCATCCCCCCATGTCCGCGGGCCTGGAGGAGCCTCTGGATCGGGTACTCCTTCCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021310-'53-61,'53-60,54-61=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.266 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(32.6=37.5),PF0139113=Collagen=FE(67.2=100)
A:
PF0139113=Collagen=PD(27.6=25.0),PF0141314=C4=PU(39.8=67.2)
C2:
PF0141314=C4=PD(59.3=66.7),PF0141314=C4=PU(25.6=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGCAGGCTGTCCAGGAG
R:
GACTGGTCTTGGCTGTGCAC
Band lengths:
256-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]