MmuEX0012293 @ mm9
Exon Skipping
Gene
ENSMUSG00000067158 | Col4a4
Description
collagen, type IV, alpha 4 [Source:MGI Symbol;Acc:MGI:104687]
Coordinates
chr1:82450352-82453470:-
Coord C1 exon
chr1:82453354-82453470
Coord A exon
chr1:82452298-82452486
Coord C2 exon
chr1:82450352-82450638
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTTATCTTTCTCTAGGCC
3' ss Score
11.29
5' ss Seq
TTGGTATGG
5' ss Score
5.53
Exon sequences
Seq C1 exon
GGTGCAAAGGAGAGCCTGGACCGGATGGCAGACGGGGCCAGGATGGCATCCCTGGATCTCCCGGGCCTCCTGGACGCAAAGGTGACACTGGAGAGGCAGGGTGTCCTGGAGCACCAG
Seq A exon
GCCCTCCTGGTCCAACTGGTGATCCTGGGCCCAAGGGGTTTGGCCCTGGATCGCTCAGTGGCTTCCTCCTGGTTCTCCACAGTCAGACTGACCAGGAACCGGCCTGCCCCGTGGGCATGCCTCGGCTTTGGACAGGGTACAGCTTGTTGTACATGGAAGGACAGGAGAAGGCGCACAATCAAGATCTTG
Seq C2 exon
GTTTGGCAGGCTCTTGTCTTCCTGTGTTTAGCACTCTGCCCTTTGCCTACTGCAACATCCACCAAGTGTGCCACTACGCCCAGAGAAATGACAGGTCCTACTGGCTGTCCAGTGCGGCTCCTCTTCCTATGATGCCACTCTCAGAGGAAGAGATCCGCTCTTACATCAGCCGCTGTGCGGTGTGTGAGGCCCCAGCACAGGCCGTGGCGGTCCACAGTCAGGACCAATCCATCCCACCGTGTCCACGGACATGGAGGAGTCTCTGGATTGGGTACTCATTTCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067158-'47-47,'47-46,48-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.438 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(65.0=100)
A:
PF0139113=Collagen=PD(28.3=26.6),PF0141314=C4=PU(39.8=67.2)
C2:
PF0141314=C4=PD(59.3=66.7),PF0141314=C4=PU(25.6=31.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCATCCCTGGATCTCCC
R:
CGGCTGATGTAAGAGCGGATC
Band lengths:
248-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: