GgaEX1016765 @ galGal4
Exon Skipping
Gene
ENSGALG00000004946 | COL4A4
Description
collagen, type IV, alpha 4 [Source:HGNC Symbol;Acc:HGNC:2206]
Coordinates
chr9:8790423-8793459:-
Coord C1 exon
chr9:8793343-8793459
Coord A exon
chr9:8792233-8792421
Coord C2 exon
chr9:8790423-8790709
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTGTGTGCAAAAAGGTC
3' ss Score
7.58
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
GAAGGAAAGGTGAAGAAGGGTCATGTGGCCTGCCAGGTCAAGATGGCTTACCAGGAGCACCTGGACCACCAGGTGACCAAGGGCATGTGGGAGAACAAGGATATGCTGGACCACAAG
Seq A exon
GTCCACCTGGCCAGACTGGTATCCCAGGACCACCAGGGCCCCATGTTAGATCTTCAAGTGGATTCTTGCTCGTCCTTCATAGTCAGTCAGACAGAGAACCACTTTGTCCACAGGGGATGCCAAAATTATGGACTGGCTATAGTCTGCTGTACCTGGAAGGACAAGAGAAAGCTCATAATCAAGATCTTG
Seq C2 exon
GTCTGGCAGGATCTTGTCTTCCTGTATTTAATACCATGCCCTTTGCTTACTGTAACATCAACCAAGTTTGTTACTATGCCAGCCGAAATGATAAGTCCTACTGGTTGTCAAGTGCCGCTCCCTTACCAATGACACCACTGTCTGAGGAAGAAATACAACCATATATAAGCAGATGTGCTGTATGTGAGGCCCCAGCCCAAGCAGTAGCAGTTCACAGCCAAGATCAGTCAATTCCTCCCTGCCCAATGAACTGGAGAAGTCTTTGGATAGGATATTCTTTTCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004946-'53-52,'53-50,54-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=0.562 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(43.5=67.5),PF0139113=Collagen=FE(67.2=100)
A:
PF0139113=Collagen=PD(29.3=26.6),PF0141314=C4=PU(63.2=67.2)
C2:
PF0141314=C4=FE(35.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAGGGTCATGTGGCCTG
R:
GGTGTCATTGGTAAGGGAGCG
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]