GgaEX1016765 @ galGal3
Exon Skipping
Gene
ENSGALG00000004946 | COL4A4
Description
NA
Coordinates
chr9:10383270-10386306:-
Coord C1 exon
chr9:10386190-10386306
Coord A exon
chr9:10385080-10385268
Coord C2 exon
chr9:10383270-10383556
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTGTGTGCAAAAAGGTC
3' ss Score
7.58
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
GAAGGAAAGGTGAAGAAGGGTCATGTGGCCTGCCAGGTCAAGATGGCTTACCAGGAGCACCTGGACCACCAGGTGACCAAGGGCATGTGGGAGAACAAGGATATGCTGGACCACAAG
Seq A exon
GTCCACCTGGCCAGACTGGTATCCCAGGACCACCAGGGCCCCATGTTAGATCTTCAAGTGGATTCTTGCTCGTCCTTCATAGTCAGTCAGACAGAGAACCACTTTGTCCACAGGGGATGCCAAAATTATGGACTGGCTATAGTCTGCTGTACCTGGAAGGACAAGAGAAAGCTCATAATCAAGATCTTG
Seq C2 exon
GTCTGGCAGGATCTTGTCTTCCTGTATTTAATACCATGCCCTTTGCTTACTGTAACATCAACCAAGTTTGTTACTATGCCAGCCGAAATGATAAGTCCTACTGGTTGTCAAGTGCCGCTCCCTTACCAATGACACCACTGTCTGAGGAAGAAATACAACCATATATAAGCAGATGTGCTGTATGTGAGGCCCCAGCCCAAGCAGTAGCAGTTCACAGCCAAGATCAGTCAATTCCTCCCTGCCCAATGAACTGGAGAAGTCTTTGGATAGGATATTCTTTTCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004946-'45-45,'45-44,46-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.453 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(30.0=67.5),PF0139113=Collagen=PU(68.4=97.5)
A:
PF0139113=Collagen=PD(29.8=26.6),PF0141314=C4=PU(39.8=67.2)
C2:
PF0141314=C4=PD(59.3=66.7),PF0141314=C4=PU(25.6=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAGGGTCATGTGGCCTG
R:
GGTGTCATTGGTAAGGGAGCG
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]