BtaEX6014601 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012094 | SCAMP3
Description
secretory carrier membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:10565]
Coordinates
chr3:15433537-15434853:+
Coord C1 exon
chr3:15433537-15433657
Coord A exon
chr3:15434129-15434257
Coord C2 exon
chr3:15434694-15434853
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCTCTTTTTGTGCCTTACAGCTC
3' ss Score
10.19
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GCTTCAACTGCAGCAGCCACAGCTGAGCTGCTAAAGAAACAGGAGGAGCTCAACCGAAAGGCAGAGGAGTTGGACCGAAGGGAGCGAGAACTCCAGCATGCTGCCCTGGGCAGCACAGCTA
Seq A exon
CTCGACAGAACAATTGGCCTCCTCTACCTTCTTTTTGCCCGGTTCAGCCCTGCTTTTTCCAGGACATCTCCATGGAGATCCCCCAAGAATTTCAGAAGACAGTATCCACCATGTACTACCTCTGGATGT
Seq C2 exon
GTAGCACTCTGGCTCTTCTTTTGAATTTTCTTGCCTGCCTGGCCAGCTTCTGTGTGGAGACCAGCAATGGCTCAGGCTTTGGGCTCTCTATCCTCTGGATCCTCCTCTTCACTCCCTGCTCCTTCGTCTGCTGGTATCGCCCCATGTACAAGGCTTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012094-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF049918=LicD=FE(35.4=100)
A:
PF049918=LicD=PD(34.5=88.6),PF041448=SCAMP=PU(23.6=95.5)
C2:
PF041448=SCAMP=FE(29.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACAGGAGGAGCTCAACCG
R:
CGGAAAGCCTTGTACATGGGG
Band lengths:
246-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]