DreEX0064344 @ danRer10
Exon Skipping
Gene
ENSDARG00000016765 | scamp3
Description
secretory carrier membrane protein 3 [Source:ZFIN;Acc:ZDB-GENE-041114-33]
Coordinates
chr19:9072457-9077979:+
Coord C1 exon
chr19:9072457-9072577
Coord A exon
chr19:9075383-9075511
Coord C2 exon
chr19:9077820-9077979
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTTCCTCTCCCTCAGCAC
3' ss Score
9.63
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
TCTGCAGTAAATGCCACCACAGCAGATCTGTTGAAGAAGCAGGAGGAGCTGGAAAGAAAAGCACAGGAGCTGGAGAGAAGAGAAAGAGAGCTGAATGCTCATGCACTTGGATCTGGAGCCT
Seq A exon
CACGTCAGAATAATTGGCCCCCATTGCCCTCCTTCTGCCCGGTGGGACCGTGCTTCTATCAGGACATTAATCTGGAGATTAGCCAAAGCTTCCAGCGCACCGTCACCACCATGTACTACTACTGGATGT
Seq C2 exon
TCACAGCATGCACTCTGCTCATTAACCTCATCTCCTGTTTGGCTGTCTTCTGTGTGGATCCCAATAATGGAGTGGGCTTTGGTCTTGCCATTCTCTGGTTTCTCCTCTTCACCCCCTGCTCCTTCGTCTGTTGGTACAGGCCTGTGTACAAAGCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016765-'3-4,'3-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.6=95.5)
C2:
PF041448=SCAMP=FE(29.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGAGGAGCTGGAAAGAA
R:
TGAAGGCTTTGTACACAGGCC
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]