MmuEX6072102 @ mm10
Exon Skipping
Gene
ENSMUSG00000028049 | Scamp3
Description
secretory carrier membrane protein 3 [Source:MGI Symbol;Acc:MGI:1346346]
Coordinates
chr3:89179317-89180888:+
Coord C1 exon
chr3:89179317-89179437
Coord A exon
chr3:89180252-89180380
Coord C2 exon
chr3:89180729-89180888
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCTGGTTTTGTGCCTTACAGCTC
3' ss Score
9.82
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GCCTCAGCTGCAGCGGCCACTGCTGAGCTGCTGAAGAAGCAGGAGGAACTCAACCGCAAGGCAGAGGAGTTGGACCGCCGGGAGCGAGAACTGCAGCATGTCGCCCTGGGTGGTGCAGGCA
Seq A exon
CTCGACAGAACAACTGGCCTCCCCTACCGTCTTTTTGCCCTGTAAAGCCTTGCTTTTTCCAAGACATCTCTATGGAGATACCCCAAGAATTTCAGAAGACGGTGTCCACCATGTACTACCTCTGGATGT
Seq C2 exon
GCAGCACTCTGGCTCTTCTCCTGAACTTCTTCGCCTGCCTGGCCAGGTTCTGTGTGGACACCGGCAGTGGCTCAGGCTTTGGGCTGTCTATGCTCTGGCTGCTCCTTTTCACTCCCTGCTCCTTTGTCTGCTGGTACCGCCCGATGTATAAGGCTTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028049-'1-13,'1-8,10-13=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.715 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF049918=LicD=FE(36.4=100)
A:
PF049918=LicD=PD(35.5=88.6),PF041448=SCAMP=PU(23.6=95.5)
C2:
PF041448=SCAMP=FE(54.6=100),PF041448=SCAMP=PU(2.0=1.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCTGAGCTGCTGAAGAA
R:
GGTACCAGCAGACAAAGGAGC
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types