HsaEX6033870 @ hg38
Exon Skipping
Gene
ENSG00000116521 | SCAMP3
Description
secretory carrier membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:10565]
Coordinates
chr1:155257498-155260450:-
Coord C1 exon
chr1:155260330-155260450
Coord A exon
chr1:155258826-155258954
Coord C2 exon
chr1:155257498-155257657
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTGTGCCTTACAGCTC
3' ss Score
11.18
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GCCTCAGCTGCAGCAGCCACAGCTGAGCTGCTGAAGAAACAGGAGGAGCTCAACCGGAAGGCAGAGGAGTTGGACCGAAGGGAGCGAGAGCTGCAGCATGCTGCCCTGGGGGGCACAGCTA
Seq A exon
CTCGACAGAACAATTGGCCCCCTCTACCTTCTTTTTGTCCAGTTCAGCCCTGCTTTTTCCAGGACATCTCCATGGAGATCCCCCAAGAATTTCAGAAGACTGTATCCACCATGTACTACCTCTGGATGT
Seq C2 exon
GCAGCACGCTGGCTCTTCTCCTGAACTTCCTCGCCTGCCTGGCCAGCTTCTGTGTGGAAACCAACAATGGCGCAGGCTTTGGGCTTTCTATCCTCTGGGTCCTCCTTTTCACTCCCTGCTCCTTTGTCTGCTGGTACCGCCCCATGTATAAGGCTTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116521-'10-14,'10-9,11-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.805 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.6=95.5)
C2:
PF041448=SCAMP=FE(29.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACAGGAGGAGCTCAACCG
R:
AAAGCCTTATACATGGGGCGG
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains