RnoEX6010269 @ rn6
Exon Skipping
Gene
ENSRNOG00000020500 | Clk2
Description
CDC-like kinase 2 [Source:RGD Symbol;Acc:1359711]
Coordinates
chr2:188491320-188493179:+
Coord C1 exon
chr2:188491320-188491440
Coord A exon
chr2:188492517-188492645
Coord C2 exon
chr2:188493020-188493179
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCTGGTTTTGTCCCTTACAGCTC
3' ss Score
11.23
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GCTACAGCTGCAGCAGCCACCGCTGAGCTGCTGAAGAAGCAGGAGGAGCTCAACCGGAAGGCAGAGGAGTTGGACCGCAGGGAGCGAGAGCTGCAGCATGTTGCCCTGGGTGGTGCAGGCA
Seq A exon
CTCGACAGAACAACTGGCCTCCCCTGCCGTCTTTTTGCCCTGTGCAGCCTTGCTTTTTCCAAGACATCTCTATGGAGATCCCCCAAGAATTTCAGAAGACAGTGTCTACCATGTACTACCTCTGGATGT
Seq C2 exon
GCAGCACTCTGGCTCTTCTCCTGAACTTCTTCGCCTGCCTGGCCAGGTTCTGTGTGGACACCGGCAGTGGGTCAGGCTTTGGGCTGTCTATGCTCTGGCTGCTCCTTTTTACTCCCTGCTCCTTTGTCTGCTGGTACCGCCCGATGTATAAGGCTTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020500-'26-42,'26-41,28-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.695 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.6=95.5)
C2:
PF041448=SCAMP=FE(29.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAGCAGGAGGAGCTCA
R:
AGCCTTATACATCGGGCGGTA
Band lengths:
245-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]