BtaEX6016264 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021217 | COL11A1
Description
Bos taurus collagen, type XI, alpha 1 (COL11A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001166509]
Coordinates
chr3:40638028-40641105:+
Coord C1 exon
chr3:40638028-40638081
Coord A exon
chr3:40639760-40639813
Coord C2 exon
chr3:40641052-40641105
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTAATATTCTTCTCTTACAGGGT
3' ss Score
11.47
5' ss Seq
GATGTAAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GGTCTTCCAGGCCCACCTGGTGAAAAAGGAGAAAATGGGGATGTTGGTCCCATG
Seq A exon
GGTCCACCTGGTCCTCCAGGCCCAAGAGGTCCTCAAGGTCCCAATGGAGCTGAT
Seq C2 exon
GGACCACAAGGACCTCCAGGATCCATTGGCTCAGTTGGTGGTGTTGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021217-'54-56,'54-55,55-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACCTGGTGAAAAAGGAG
R:
CTCCAACACCACCAACTGAGC
Band lengths:
93-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]