GgaEX0007145 @ galGal4
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2186]
Coordinates
chr8:10260930-10261608:+
Coord C1 exon
chr8:10260930-10260983
Coord A exon
chr8:10261398-10261451
Coord C2 exon
chr8:10261555-10261608
Length
54 bp
Sequences
Splice sites
3' ss Seq
AAACTGTCTCTTTGATACAGGGT
3' ss Score
7.45
5' ss Seq
GATGTAAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GGTTTGCCTGGCCCACCAGGTGAAAAAGGTGAAAATGGGGATGTGGGCCCGATG
Seq A exon
GGTCCGCCTGGTCCTCCAGGTCCAAGAGGCCCCCAAGGTCCTAATGGAGCTGAT
Seq C2 exon
GGTCCTCAAGGCCCCCCAGGCTCAATCGGCTCTGTTGGAGGTGTTGGGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180_MULTIEX2-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTGCCTGGCCCACCA
R:
CTTTTCCCCAACACCTCCAACA
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]