GgaEX0007145 @ galGal3

Exon Skipping

Gene

ENSGALG00000005180 | COL11A1

Description

NA

Coordinates

chr8:11997987-12007219:+

Coord C1 exon

chr8:11997987-11998040

Coord A exon

chr8:11998455-11998508

Coord C2 exon

chr8:12007166-12007219

Length

54 bp

Sequences

Splice sites

3' ss Seq

AAACTGTCTCTTTGATACAGGGT

3' ss Score

7.45

5' ss Seq

GATGTAAGA

5' ss Score

5.46

Exon sequences

Seq C1 exon

GGTTTGCCTGGCCCACCAGGTGAAAAAGGTGAAAATGGGGATGTGGGCCCGATG

Seq A exon

GGTCCGCCTGGTCCTCCAGGTCCAAGAGGCCCCCAAGGTCCTAATGGAGCTGAT

Seq C2 exon

GGTCAAGATGGTGTTGGTGGAGAAAAGGGTGAAGATGGTGATCCTGGTCAACCT

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000005180_MULTIEX2-20/24=19-C2

Average complexity

C3

Mappability confidence:

NA

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

  C1=1.000 A=1.000 C2=1.000

Domain overlap (PFAM):

C1:

NO

A:

NO

C2:

NO

Main Inclusion Isoform:

ENSGALP00000008307

Main Skipping Isoform:

NA

Other Inclusion Isoforms:

ENSGALP00000008306

Other Skipping Isoforms:

NA

Associated events

Other assemblies

galGal4

Conservation

Human

(hg38)

No conservation detected

Human

(hg19)

chr1:103387074-103387127

HIGH PSI

HsaEX6032446

(COL11A1)

Mouse

(mm10)

chr3:114181342-114181395

HIGH PSI

MmuEX6073560

(Col11a1)

Mouse

(mm9)

chr3:113884260-113884313

HIGH PSI

MmuEX6073560

(Col11a1)

Rat

(rn6)

chr2:217019164-217019217

HIGH PSI

RnoEX6011198

(Col11a1)

Cow

(bosTau6)

chr3:40639760-40639813

HIGH PSI

BtaEX6016264

(COL11A1)

Zebrafish

(danRer10)

chr24:28718051-28718104

ALTERNATIVE

DreEX0022801

(col11a1a)

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

GGTTTGCCTGGCCCACCA

R:

AGGTTGACCAGGATCACCATCT

Band lengths:

108-162

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]