BtaEX6016479 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004190 | ARHGAP29
Description
Bos taurus Rho GTPase activating protein 29 (ARHGAP29), mRNA. [Source:RefSeq mRNA;Acc:NM_001102485]
Coordinates
chr3:49440033-49440844:+
Coord C1 exon
chr3:49440033-49440097
Coord A exon
chr3:49440527-49440637
Coord C2 exon
chr3:49440764-49440844
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTTCAATTTTAAATTCTAGGAG
3' ss Score
9.66
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AATTGGAGTCCACTAGAAATATTGTTAAGTTGGCAGAGGCAACTAGAACTAACATTGGATTACAG
Seq A exon
GAGTTTATGCCACTGCAGTCTTTATTTACCAATGCCCTTCTTAATGATATAGAGAGTAGTCACCTTTTACAGCAAACAATTGCAGCTCTCCAAGCCAACAAATTTGTGCAG
Seq C2 exon
CCTCTACTTGGGAGGAAAAATGAAATGGAAAAACAAAGGAAAGAAATAAAAGAACTTTGGAAGCAGGAGCAAAATAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004190-'15-14,'15-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.148
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTAGAAATATTGTTAAGTTGGC
R:
CATTTTATTTTGCTCCTGCTTCCA
Band lengths:
138-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]