HsaEX6032231 @ hg19
Exon Skipping
Gene
ENSG00000137962 | ARHGAP29
Description
Rho GTPase activating protein 29 [Source:HGNC Symbol;Acc:30207]
Coordinates
chr1:94668474-94669550:-
Coord C1 exon
chr1:94669486-94669550
Coord A exon
chr1:94668656-94668766
Coord C2 exon
chr1:94668474-94668554
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTTCAATTTTAAATTTTAGGAG
3' ss Score
9.73
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AATTGGAGTCCACTAGAAATATGGTCAAGTTGGCAGAGGCAACTAGAACTAACATTGGAATTCAG
Seq A exon
GAGTTCATGCCACTGCAGTCTCTGTTTACTAATGCTCTTCTTAATGATATAGAAAGCAGTCACCTTTTACAACAAACAATTGCAGCTCTCCAGGCTAACAAATTTGTGCAG
Seq C2 exon
CCTCTACTTGGAAGGAAAAATGAAATGGAAAAACAAAGGAAAGAAATAAAAGAGCTTTGGAAACAGGAGCAAAATAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137962-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.148
Domain overlap (PFAM):
C1:
PF083036=tRNA_lig_kinase=PU(6.2=31.8)
A:
PF083036=tRNA_lig_kinase=FE(32.1=100)
C2:
PF083036=tRNA_lig_kinase=FE(23.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGGAGTCCACTAGAAATATGGT
R:
CATTTTATTTTGCTCCTGTTTCCAA
Band lengths:
146-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)