HsaEX6032231 @ hg38
Exon Skipping
Gene
ENSG00000137962 | ARHGAP29
Description
Rho GTPase activating protein 29 [Source:HGNC Symbol;Acc:HGNC:30207]
Coordinates
chr1:94202918-94203994:-
Coord C1 exon
chr1:94203930-94203994
Coord A exon
chr1:94203100-94203210
Coord C2 exon
chr1:94202918-94202998
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTTCAATTTTAAATTTTAGGAG
3' ss Score
9.73
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AATTGGAGTCCACTAGAAATATGGTCAAGTTGGCAGAGGCAACTAGAACTAACATTGGAATTCAG
Seq A exon
GAGTTCATGCCACTGCAGTCTCTGTTTACTAATGCTCTTCTTAATGATATAGAAAGCAGTCACCTTTTACAACAAACAATTGCAGCTCTCCAGGCTAACAAATTTGTGCAG
Seq C2 exon
CCTCTACTTGGAAGGAAAAATGAAATGGAAAAACAAAGGAAAGAAATAAAAGAGCTTTGGAAACAGGAGCAAAATAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137962_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.148
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGGAGTCCACTAGAAATATGGT
R:
CATTTTATTTTGCTCCTGTTTCCAA
Band lengths:
146-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains