MmuEX7002116 @ mm10
Exon Skipping
Gene
ENSMUSG00000039831 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:MGI Symbol;Acc:MGI:2443818]
Coordinates
chr3:121991862-121992613:+
Coord C1 exon
chr3:121991862-121991926
Coord A exon
chr3:121992334-121992444
Coord C2 exon
chr3:121992533-121992613
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTTTCACCTGTATGTTCTAGGAG
3' ss Score
9.81
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AATTGGAGTCCACTAGAAATATTGTAAAATTGGCAGAGGCAACTAGATCTAGCATTGGTATACAA
Seq A exon
GAGTTTATGCCACTGCAGTCTCTATTTACCAACGCTCTTCTCAGTGACATCCACAGCAGCCACCTTCTACAACAGACAATTGCAGCCCTCCAAGCCAATAAATTTGTGCAG
Seq C2 exon
CCTCTACTTGGGAGGAAGAATGAGATGGAGAAGCAAAGGAAAGAAATAAAAGACCTTTGGAAGCAGCAACAGAATAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039831-'18-23,'18-21,22-23=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATATTGTAAAATTGGCAGAGGCA
R:
CAATTTATTCTGTTGCTGCTTCCA
Band lengths:
130-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types