DreEX6026074 @ danRer10
Exon Skipping
Gene
ENSDARG00000017748 | arhgap29b
Description
Rho GTPase activating protein 29b [Source:ZFIN;Acc:ZDB-GENE-031010-44]
Coordinates
chr2:15501585-15502674:+
Coord C1 exon
chr2:15501585-15501649
Coord A exon
chr2:15502392-15502502
Coord C2 exon
chr2:15502594-15502674
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTTTTTATCTTAAGGAT
3' ss Score
10.37
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
ACATGGAATGTGCCAAAAGCTTTGCCAAGATGGCAGAATCCGCAAAGGCTGTAGCAAGTCAACAG
Seq A exon
GATTTCATGCCTTTCCGGGATATCTATGTCTCTGCCTTTAAAAATGAAATCGAGTACAATCATGTACTGCTCCAAACGGCTGCAGCTCTTCAGACCAACAAATTCACACAG
Seq C2 exon
CCACTGCTGGCCCGCAAGAATGACCTGGACAAGCAGAGGAAAGAGATTAAAGAACAATGGCAAAGAGAGCTGAAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017748-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGAATGTGCCAAAAGCT
R:
CATTTTCTTCAGCTCTCTTTGCCA
Band lengths:
146-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]