RnoEX6011341 @ rn6
Exon Skipping
Gene
ENSRNOG00000012563 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:RGD Symbol;Acc:1306185]
Coordinates
chr2:225589692-225590437:+
Coord C1 exon
chr2:225589692-225589756
Coord A exon
chr2:225590146-225590256
Coord C2 exon
chr2:225590357-225590437
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTTTCACCTTTAAATTCTAGGAG
3' ss Score
9.38
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AATTGGAGTCCACTAGAAATATTGTAAAATTGGCAGAGGCAACTAGATCTAGCATTGGAATACAG
Seq A exon
GAGTTTATGCCTTTGCAGTCTCTCTTTACCAACGCTCTCCTTAATGATATACACAGCAGTCACCTTTTACAACAGACAATCGCAGCTCTCCAAGCCAACAAATTCGTGCAG
Seq C2 exon
CCTCTACTTGGGAGGAAGAATGAAATGGAGAAACAAAGGAAAGAAATAAAAGAACTTTGGAAGCAGCAGCAGAATAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012563-'20-22,'20-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATATTGTAAAATTGGCAGAGGCA
R:
CAATTTATTCTGCTGCTGCTTCCA
Band lengths:
130-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]