GgaEX6044175 @ galGal3
Exon Skipping
Gene
ENSGALG00000005683 | ARHGAP29
Description
NA
Coordinates
chr8:14332051-14332875:+
Coord C1 exon
chr8:14332051-14332115
Coord A exon
chr8:14332551-14332661
Coord C2 exon
chr8:14332795-14332875
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTCTGTAATTTTAGGAT
3' ss Score
10.67
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
AAGTGGAATGTGCTAAAAACTTAGCAAAAATGGCTGAAACCATTAAAGCTGCTGTTGGACCGCAG
Seq A exon
GATTATATGCCATTCCAATCAATATTCCTTAATGCTCTTCAAAATGATATTGAGAACAATCAACTTTGGCAACAAACAGCTGCTGCTCTCCAGTCTAACAAATTTGTGCAG
Seq C2 exon
CCTCTTCTGGGAAGAAAGAATGAGTTGGATAGACAAAGGAAAGAAATCAAGGAGCTTTGGCAGCGTGAACAGAAAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005683-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAAAACTTAGCAAAAATGGCTGA
R:
TTTTTCTGTTCACGCTGCCAA
Band lengths:
130-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]