DreEX6095532 @ danRer10
Exon Skipping
Gene
ENSDARG00000026329 | arhgap29a
Description
Rho GTPase activating protein 29a [Source:ZFIN;Acc:ZDB-GENE-030131-9510]
Coordinates
chr24:28450831-28451942:+
Coord C1 exon
chr24:28450831-28450895
Coord A exon
chr24:28451017-28451127
Coord C2 exon
chr24:28451862-28451942
Length
111 bp
Sequences
Splice sites
3' ss Seq
ATCTGTTTTCTTTAATCCAGGAG
3' ss Score
8.28
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ACATCGAGTGTGCAAAGAGCTATGCCAAGATGGCTGAATCTGCAAAGGCGCTGGCGTCTCAACAG
Seq A exon
GAGCACATGCCATTCAGGGATATTTACATCTCTGCCTTCAGGAACGACATTGAATACAGTCAGCTTATCATGCAAACCACAGCCGCTCTACAGGCCAACAAATTCATGCAG
Seq C2 exon
CCTCTGCAAGCTCGAAAAAGTGAGCTAGATAAACTGAGGAAGGAGGTGAAGGAACAGTGGCAGAGGGAACAGAAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026329-'13-16,'13-14,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.027 C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
PF052626=Borrelia_P83=PU(34.9=78.4)
C2:
PF052626=Borrelia_P83=FE(31.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCGAGTGTGCAAAGAGCT
R:
CATTTTCTTCTGTTCCCTCTGCC
Band lengths:
146-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]