BtaEX6016507 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49642342-49647694:+
Coord C1 exon
chr3:49642342-49642547
Coord A exon
chr3:49642916-49642964
Coord C2 exon
chr3:49647435-49647694
Length
49 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTCTTTCTGGACAGATT
3' ss Score
10.68
5' ss Seq
CTGGTATGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GGGATGTGAATGAACTGACGGATATGGTTCACCACCATGTTCCAGAGGCGAAGCTGGTAGAATGCATTGGTCAAGAACTTATCTTCCTTCTTCCAAATAAGAATTTCAAGCAGAGAGCATATGCTAGCCTTTTCAGAGAGCTGGAGGAGACGCTGGCTGACCTGGGACTCAGCAGTTTTGGAATTTCTGACACTCCCCTGGAAGAG
Seq A exon
ATTTTCCTGAAGGTCACAGAGGATTTGGATTCAGGACATCTGTTTGCTG
Seq C2 exon
GAGGCACTCAGCAGAAAAGAGAAAACATCAACCTTCGACACCCCTGTTCGGGTCCTAGCGAGAAGGCCGGACAGACTCCCCAGGGCTCCAGCAGCCACCCCAGAGAGCCAGCTGCTCACCCGGAGGGCCAGCCTCCACCGGAGCGGGAGGGACACAGCCGACTGAACTCAGGAGCTCGGCTTATTGTCCAGCACGTGCAGGCACTGCTGGTCAAGAGGTTCCAGCACACCATCCGCAGCCACAAGGACTTCCTGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010-'33-26,'33-25,34-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.235 C2=0.586
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGAGAGCTGGAGGAGACG
R:
TTCTCGCTAGGACCCGAACAG
Band lengths:
139-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]