MmuEX6073807 @ mm10
Exon Skipping
Gene
ENSMUSG00000028125 | Abca4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:MGI Symbol;Acc:MGI:109424]
Coordinates
chr3:122132524-122135264:+
Coord C1 exon
chr3:122132524-122132729
Coord A exon
chr3:122133053-122133101
Coord C2 exon
chr3:122135002-122135264
Length
49 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTCATGTCTCCACAGATT
3' ss Score
11.75
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GAGATGTGCAGGAGCTGATGGATTTGGTATACCACCATGTCCCAGAGGCAAAGCTGGTGGAATGCATTGGTCAAGAACTTATCTTCCTCCTTCCAAACAAGAATTTCAAGCAGAGAGCATATGCCAGCCTTTTCCGAGAGCTGGAGGAGACTCTGGCTGACCTGGGGCTCAGCAGCTTTGGAATTTCTGACACTCCCCTGGAAGAG
Seq A exon
ATTTTCCTGAAGGTCACAGAGGATGCTGGAGCGGGCTCTATGTTTGTAG
Seq C2 exon
GTGGCGCTCAGCAGAAAAGAGAACAAGCCGGTCTCCGGCACCCTTGTTCGGCTCCCACTGAGAAGCTCAGGCAGTATGCCCAGGCCCCACATACCTGTTCCCCAGGACAAGTGGATCCTCCCAAGGGCCAACCTTCCCCAGAGCCAGAGGACCCCGGTGTCCCATTCAACACAGGTGCTCGGCTGATTCTTCAACATGTGCAGGCCCTGCTAGTCAAGCGATTCCATCACACCATCCGCAGCCGCAAGGACTTTGTGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028125-'52-59,'52-49,54-59=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.235 C2=0.450
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACACTCCCCTGGAAGAG
R:
ATCCACTTGTCCTGGGGAACA
Band lengths:
137-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types