GgaEX6044198 @ galGal4
Exon Skipping
Gene
ENSGALG00000005752 | ABCA4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N8D7]
Coordinates
chr8:12653141-12654554:+
Coord C1 exon
chr8:12653141-12653346
Coord A exon
chr8:12653753-12653801
Coord C2 exon
chr8:12654313-12654554
Length
49 bp
Sequences
Splice sites
3' ss Seq
GACGTGTTTGTCTGTGGCAGGTT
3' ss Score
9.35
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GAGATTTGAATGAACTAGCAGAAGTAATTAATCATCATATCCCCGAAGCAAAATTAATTGAAAATATTGGTCAAGAACTCGTTTACCTTTTGCCCAATAAACACTTTAAACAGCGATCTTATGCCAGTCTCTTCAGAGAACTGGAGGAAACACTGGATGACTTGGGACTTAGCAGTTTTGGAGTTTCAGACACACCACTTGAAGAG
Seq A exon
GTTTTCCTAAAGGTAACAGCAGAAGCTGACCCTGAAGTGCAAAAAGCAG
Seq C2 exon
GAGACACTCAAGGAAACAATTCTACTCCTGGCAAAATTTCTACTGAGAACAGAACAGCTGAACAGACCCCAGTGGAAACCAATGACACTTCTCGAATGCCAGCAGGCATAGCAGGGGATCAAAATGAAGGCAAAGGGTCCCTGCAGTATAAAGGTTTTCAACTTGTACATCAGCAGTTCAAAGCACTGTTCATCAAACGGTTCCACCATGCCTCCCGCAGCTACAAGGATTTCTTAACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752-'30-31,'30-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.353 C2=0.519
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTTCAGACACACCACT
R:
CTGCTGGCATTCGAGAAGTGT
Band lengths:
133-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]