RnoEX0004879 @ rn6
Exon Skipping
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225736775-225739510:+
Coord C1 exon
chr2:225736775-225736980
Coord A exon
chr2:225737317-225737365
Coord C2 exon
chr2:225739248-225739510
Length
49 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTCGTGTCTCAACAGATT
3' ss Score
11.52
5' ss Seq
TAGGTATGC
5' ss Score
7.53
Exon sequences
Seq C1 exon
GGGATGTGAAGGAGCTGACAGATTTGGTGTACCACCATGTTCCAGAGGCAAAGCTGGTGGAATGCATTGGCCAAGAACTTATCTTCCTCCTCCCAAACAAGAATTTCAAGCAGAGAGCATATGCCAGCCTCTTCCGAGAGCTGGAGGAGACTCTGGCTGACCTGGGGCTCAGCAGCTTTGGAATTTCTGACACTCCCCTGGAAGAG
Seq A exon
ATTTTCCTGAAGGTCACGGAGGATTCTGAATCAGGTTCTAAGTTTGTAG
Seq C2 exon
GTGGCACACAGCAGAAGAGAGAGCATACTGGTCTTCGGCATCCTTGTTCGGCTCCCGTCGAGAAGCACAGGCAGCATGCCCAGGCCTCACATACCTGTTCCCCAGGACAAGTGGATCCTCCCAAGGGCCAGCCTTCCCCAGAGCCAGAGGACCCCGGTATCCCATTCAACACAGGTGCTCGGCTGATCCTTCAGCATGTGCAGGCACTGCTGGTCAAGCGATTCCATCATGCTGTCCGCAGCCGCAAGGATTTTGTGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.353 C2=0.636
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCATATGCCAGCCTCTTCC
R:
GGATGCCGAAGACCAGTATGC
Band lengths:
135-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]